ncbi pathogen detection Search Results


ncbi pathogen detection system  (Biotechnology Information)
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Biotechnology Information ncbi pathogen detection system
Serovar Infantis and Typhimurium isolates collected in this study are not closely related to other isolates from mixed environmental sources. Study isolates are bolded, with the label format of month-watershed-site, and <t>NCBI</t> isolates are listed by sample ID with branch color corresponding to isolation type (human clinical: red, environmental/other: green, creek: blue). Isolation type was provided by NCBI metadata, and the HierCC schemes were determined through Enterobase. Schemes were only reported if they are shared between two or more isolates. The phylogenies are rooted at the midpoint and include all isolates within the two SNP clusters most closely related to study isolates. HC20 and HC5 values were added to reflect that the study isolates were greater than 20 and 5 allelic differences from the NCBI isolates, respectively. For the matrices, darker shading indicates a greater SNP distance. ( A ) Serovar Infantis core genome phylogeny, ( B ) Serovar Infantis SNP matrix, ( C ) Serovar Typhimurium core genome phylogeny, ( D ) Serovar Typhimurium SNP matrix based on corresponding phylogenetic clades (1–5).
Ncbi Pathogen Detection System, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/ncbi+pathogen+detection/database+detection+ncbi+pathogen/pmc12724317-77-26-24
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ncbi pathogen detection system  (Pfizer Inc)
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Pfizer Inc ncbi pathogen detection system
Serovar Infantis and Typhimurium isolates collected in this study are not closely related to other isolates from mixed environmental sources. Study isolates are bolded, with the label format of month-watershed-site, and <t>NCBI</t> isolates are listed by sample ID with branch color corresponding to isolation type (human clinical: red, environmental/other: green, creek: blue). Isolation type was provided by NCBI metadata, and the HierCC schemes were determined through Enterobase. Schemes were only reported if they are shared between two or more isolates. The phylogenies are rooted at the midpoint and include all isolates within the two SNP clusters most closely related to study isolates. HC20 and HC5 values were added to reflect that the study isolates were greater than 20 and 5 allelic differences from the NCBI isolates, respectively. For the matrices, darker shading indicates a greater SNP distance. ( A ) Serovar Infantis core genome phylogeny, ( B ) Serovar Infantis SNP matrix, ( C ) Serovar Typhimurium core genome phylogeny, ( D ) Serovar Typhimurium SNP matrix based on corresponding phylogenetic clades (1–5).
Ncbi Pathogen Detection System, supplied by Pfizer Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/ncbi+pathogen+detection/detection+ncbi+pathogen+system/pm41386779-584-2-9
Average 86 stars, based on 1 article reviews
ncbi pathogen detection system - by Bioz Stars, 2026-09
86/100 stars
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Serovar Infantis and Typhimurium isolates collected in this study are not closely related to other isolates from mixed environmental sources. Study isolates are bolded, with the label format of month-watershed-site, and NCBI isolates are listed by sample ID with branch color corresponding to isolation type (human clinical: red, environmental/other: green, creek: blue). Isolation type was provided by NCBI metadata, and the HierCC schemes were determined through Enterobase. Schemes were only reported if they are shared between two or more isolates. The phylogenies are rooted at the midpoint and include all isolates within the two SNP clusters most closely related to study isolates. HC20 and HC5 values were added to reflect that the study isolates were greater than 20 and 5 allelic differences from the NCBI isolates, respectively. For the matrices, darker shading indicates a greater SNP distance. ( A ) Serovar Infantis core genome phylogeny, ( B ) Serovar Infantis SNP matrix, ( C ) Serovar Typhimurium core genome phylogeny, ( D ) Serovar Typhimurium SNP matrix based on corresponding phylogenetic clades (1–5).

Journal: Applied and Environmental Microbiology

Article Title: A two-year study of Salmonella in four natural watersheds highlights the need for increased environmental Salmonella surveillance to close the One Health loop

doi: 10.1128/aem.01770-25

Figure Lengend Snippet: Serovar Infantis and Typhimurium isolates collected in this study are not closely related to other isolates from mixed environmental sources. Study isolates are bolded, with the label format of month-watershed-site, and NCBI isolates are listed by sample ID with branch color corresponding to isolation type (human clinical: red, environmental/other: green, creek: blue). Isolation type was provided by NCBI metadata, and the HierCC schemes were determined through Enterobase. Schemes were only reported if they are shared between two or more isolates. The phylogenies are rooted at the midpoint and include all isolates within the two SNP clusters most closely related to study isolates. HC20 and HC5 values were added to reflect that the study isolates were greater than 20 and 5 allelic differences from the NCBI isolates, respectively. For the matrices, darker shading indicates a greater SNP distance. ( A ) Serovar Infantis core genome phylogeny, ( B ) Serovar Infantis SNP matrix, ( C ) Serovar Typhimurium core genome phylogeny, ( D ) Serovar Typhimurium SNP matrix based on corresponding phylogenetic clades (1–5).

Article Snippet: Therefore, we completed a phylogenetic comparison of the study isolates belonging to these two serovars against publicly available genomes in the National Center for Biotechnology Information (NCBI) Pathogen Detection system, which hosts human clinical and USDA-FSIS whole genome sequences, among others ( ; ; ).

Techniques: Isolation